Compartmental Model — Compartmental • macpan2

Create an object for containing a compartmental model.

Usage

Compartmental(model_directory)

model_directory: String giving a path to a directory containing the following files, variables.csv, derivations.json, flows.csv, and settings.json, described by this spec.

An object with the following methods and fields.

$variables$all(): Partition object of all variables.
$flows(): Data frame with rows giving all groups of flows.
$flows_expanded(): Data frame with rows giving all individual flows.
$variables$state(): Partition object of all state variables.
$variables$flow(): Partition object of all flow variables.
$all_labels(): Character vector giving the labels of all variables.
$labels$state(): Character vector giving the labels of all state variables.
$labels$flow(): Character vector giving the labels of all flow variables.
$labels$other(): Character vector giving the labels of all variables that are neither state nor flow variables.
$expr_list(): ExprList object containing all expressions.

$def: The ModelFiles object representing the directory that defines the model.
$simulators: A Simulators instance containing methods for generating simulators, which are objects that can generate simulations from the model.