Find all Paths Through Compartments — find_all

Find all paths through a compartmental model.

Usage

find_all_paths(edges_df, start_node_guesses = character(0L))

Arguments

edges_df: A data frame with a from and a to column, which can be extracted from a model specification object using the mp_flow_frame.
start_node_guesses: Optional guesses for nodes that start paths. This is useful for models that are not directed acyclic graphs (DAGs).

Value

List of character vectors of state variable names, each vector describing a path through the model.

Examples

spec = mp_tmb_library("starter_models", "macpan_base", package = "macpan2")
spec |> mp_flow_frame() |> find_all_paths()
#> [[1]]
#> [1] "S"  "E"  "Ia" "R" 
#> 
#> [[2]]
#> [1] "S"  "E"  "Ip" "Im" "R" 
#> 
#> [[3]]
#> [1] "S"  "E"  "Ip" "Is" "D" 
#> 
#> [[4]]
#> [1] "S"  "E"  "Ip" "Is" "H"  "R" 
#> 
#> [[5]]
#> [1] "S"    "E"    "Ip"   "Is"   "ICUd" "D"   
#> 
#> [[6]]
#> [1] "S"    "E"    "Ip"   "Is"   "ICUs" "H2"   "R"   
#>