Package index
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add_user_entries()
- Add entries to user table
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create_bin_desc()
- Create age bin descriptions
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generate_empty_df()
- Create empty table with column names
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generate_user_table()
- Create user-defined lookup table
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join_lookup_table()
- Join lookup table
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join_user_table()
- Join user-defined lookup table
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lookup_join()
- Left join for lookup tables
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names_to_join_by()
- Column names to join by
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resolve_join()
- Resolve left_join
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ComputeMovingAverage()
- Compute Moving Average of Time Series
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HandleMissingValues()
- Handle Missing Values in Series Variable
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HandleZeroValues()
- Handle Zero Values in Series Variable
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PeriodAggregator()
- Period Aggregator
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SeriesHarmonizer()
- Wavelet Series Harmonizer
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TimeScalePicker()
- Time Scale Picker
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TrimSeries()
- Trim Time Series
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WaveletDeheaper()
- De-heaping time series
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WaveletInterpolator()
- Wavelet Interpolator
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WaveletJoiner()
- Wavelet Joiner
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WaveletNormalizer()
- Wavelet Normalizer
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WaveletTransformer()
- Wavelet Transformer
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browse_pipeline_dependencies()
- Browse Pipeline Dependencies
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ca_iso_3166_2()
- Order Canadian Provinces Geographically
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check_date()
- Test if x is a Date, coerce if not
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clean_canmod_cdi()
- Clean CANMOD CDI Data
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data_prep_constructors
- Data Prep Constructors
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factor_time_scale()
- Factor Time Scale
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find_unaccounted_cases()
- Find Unaccounted Cases
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generate_disease_df()
- Data for a Particular Disease
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get_implied_zeros()
- Get Implied Zeros
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get_unit_labels()
- Get time unit labels
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grid_dates()
- Create a grid of dates starting at the first day in grid unit
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iidda_get_metadata()
- Get IIDDA metadata
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iidda_plot_bar()
- Plot Bar Graph
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iidda_plot_box()
- Plot Box Plot
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iidda_plot_heatmap()
- Plot Heatmap
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iidda_plot_highlight()
- Add Plot Highlight
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iidda_plot_ma()
- Plot Moving Average Time Series
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iidda_plot_rohani_heatmap()
- Plot Rohani Heatmap
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iidda_plot_scales()
- Scale series data
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iidda_plot_series()
- Plot Time Series
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iidda_plot_settings()
- LBoM plot settings
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iidda_plot_wavelet()
- Plot Wavelet
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iidda_prep_bar()
- Prep Data for Bar Graph
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iidda_prep_box()
- Prep Data for Box plot
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iidda_prep_ma()
- Prep Data for Moving Average Plot
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iidda_prep_rohani()
- Prep Data for Rohani Plot
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iidda_prep_seasonal_heatmap()
- Prep Data for seasonal heatmap
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iidda_prep_series()
- Prep Data for Time Series
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iidda_prep_wavelet()
- Prep Data for Wavelet Plot
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iidda_theme()
iidda_theme_time()
iidda_theme_heat()
iidda_theme_above()
- Themes for ggplot2
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log1p_modified_trans()
- Log1p Scale Transformation
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lubridate_funcs
- Lubridate functions
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make_time_trans()
- Get time transformation
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mid_dates()
mid_times()
- Period Mid-Dates and Mid-Times
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mutate_time_vars()
- Mutate time variables
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normalize_disease_hierarchy()
- Normalize Disease Hierarchy
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normalize_duplicate_sources()
- Normalize Duplicate Sources
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normalize_location()
- Normalize Location
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normalize_population()
- Normalize Population
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normalize_time_scales()
- Normalize Time Scales
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num_days()
num_days_util()
- Numbers of Days
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period_averager()
- Obtain period midpoints and average daily rates for count data
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quantile_trans()
- Quantile Transformation
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read_iidda_dataset()
- Read IIDDA Dataset into a Dataframe
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time_extent()
- Time Extent
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time_scale_picker()
- Default Time Scale Picker
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time_units
- Time units
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titleize()
- Titleize
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union_series()
- Union Time Series
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unique_entries()
- Get unique tokens from iidda metadata
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valid_time_vars()
- Validate time variables
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year_end_fix()
- Year End Fix