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Data Harmonization

add_user_entries()
Add entries to user table
create_bin_desc()
Create age bin descriptions
generate_empty_df()
Create empty table with column names
generate_user_table()
Create user-defined lookup table
join_lookup_table()
Join lookup table
join_user_table()
Join user-defined lookup table
lookup_join()
Left join for lookup tables
names_to_join_by()
Column names to join by
resolve_join()
Resolve left_join

Not Data Harmonization

ComputeMovingAverage()
Compute Moving Average of Time Series
HandleMissingValues()
Handle Missing Values in Series Variable
HandleZeroValues()
Handle Zero Values in Series Variable
PeriodAggregator()
Period Aggregator
SeriesHarmonizer()
Wavelet Series Harmonizer
TimeScalePicker()
Time Scale Picker
TrimSeries()
Trim Time Series
WaveletDeheaper()
De-heaping time series
WaveletInterpolator()
Wavelet Interpolator
WaveletJoiner()
Wavelet Joiner
WaveletNormalizer()
Wavelet Normalizer
WaveletTransformer()
Wavelet Transformer
browse_pipeline_dependencies()
Browse Pipeline Dependencies
ca_iso_3166_2()
Order Canadian Provinces Geographically
check_date()
Test if x is a Date, coerce if not
clean_canmod_cdi()
Clean CANMOD CDI Data
data_prep_constructors
Data Prep Constructors
factor_time_scale()
Factor Time Scale
find_unaccounted_cases()
Find Unaccounted Cases
generate_disease_df()
Data for a Particular Disease
get_implied_zeros()
Get Implied Zeros
get_unit_labels()
Get time unit labels
grid_dates()
Create a grid of dates starting at the first day in grid unit
iidda_get_metadata()
Get IIDDA metadata
iidda_plot_bar()
Plot Bar Graph
iidda_plot_box()
Plot Box Plot
iidda_plot_heatmap()
Plot Heatmap
iidda_plot_highlight()
Add Plot Highlight
iidda_plot_ma()
Plot Moving Average Time Series
iidda_plot_rohani_heatmap()
Plot Rohani Heatmap
iidda_plot_scales()
Scale series data
iidda_plot_series()
Plot Time Series
iidda_plot_settings()
LBoM plot settings
iidda_plot_wavelet()
Plot Wavelet
iidda_prep_bar()
Prep Data for Bar Graph
iidda_prep_box()
Prep Data for Box plot
iidda_prep_ma()
Prep Data for Moving Average Plot
iidda_prep_rohani()
Prep Data for Rohani Plot
iidda_prep_seasonal_heatmap()
Prep Data for seasonal heatmap
iidda_prep_series()
Prep Data for Time Series
iidda_prep_wavelet()
Prep Data for Wavelet Plot
iidda_theme() iidda_theme_time() iidda_theme_heat() iidda_theme_above()
Themes for ggplot2
log1p_modified_trans()
Log1p Scale Transformation
lubridate_funcs
Lubridate functions
make_time_trans()
Get time transformation
mid_dates() mid_times()
Period Mid-Dates and Mid-Times
mutate_time_vars()
Mutate time variables
normalize_disease_hierarchy()
Normalize Disease Hierarchy
normalize_duplicate_sources()
Normalize Duplicate Sources
normalize_location()
Normalize Location
normalize_population()
Normalize Population
normalize_time_scales()
Normalize Time Scales
num_days() num_days_util()
Numbers of Days
period_averager()
Obtain period midpoints and average daily rates for count data
quantile_trans()
Quantile Transformation
read_iidda_dataset()
Read IIDDA Dataset into a Dataframe
time_extent()
Time Extent
time_scale_picker()
Default Time Scale Picker
time_units
Time units
titleize()
Titleize
union_series()
Union Time Series
unique_entries()
Get unique tokens from iidda metadata
valid_time_vars()
Validate time variables
year_end_fix()
Year End Fix